Dr.
med. Michael Rotte 
| Dr.
med. Michael Rotte |
|
|
|
| is behind this page? | Dr. Michael Rotte, Consultant
Neurology & Somnology, PI Center of Advanced Imaging (CAI) |
|
| Neurology 2, Otto von Guericke University, Magdeburg | BIO go | |
| Leipziger Str. 44, 39120 Magdeburg, Germany | ||
| email: rotte@neuro2.med.uni-magdeburg.de | Sleep go | |
| phone: out-patient +49 (391) 67-15031 | ||
| clinical office +49 (391) 67-13429 | Students go |
|
| research office +49 (391) 6117-184 | ||
| FAX: clinical +49 (391) 67-15233 | ||
| research +49 (391) 6117-178 |
What
do
you get here? Information around Imaging and Analysis, current events
(e.g.
Meetings) and Software.
| fMRI go | MEG go | ERP go | ||
| Events go | PubMed go | NeuroNord go | ||
| UNIX go | Matlab go | Neurology go | ||
| Organisations go | Presentation Software go | |||
| recent updates with red background | ||||
| Human Brain Mapping 2005 | Toronto, Canada 12-16 June | HBM 2005 |
| Cognitive Neuroscience Society 2005 | New York, USA 10-12 April | CNS 2005 |
| ISMRM 2005 | Miami, Florida 7-13 May | ISMRM 2005 |
| Society for Neuroscience 2004 | Washtington, USA 12-16 November | NS2005 |
| European Neurological Society 2005 | Vienna, Autria 18-22 June | ENS 2005 |
| XVIII World Congress of Neurology | Sydney, Australia 5-13 Nov 2005 | N 2005 |
| Dt. Gesell. f. Neurologie | Wiesbaden
21-24
September |
DGN 2005 |
| Dt. Gesell. f. Klinische Neurophysiologie | Gießen
22-26 März |
DGKN 2006 |
| Titel | Where | Comment |
| The Human Brain: Dissections of the Real Brain | TOC.html | |
| The whole brain Atlas | AANLIB | |
FMRI:
FUNCTIONAL
MAGNETIC
RESONANCE
IMAGING
 |
Basic task is the transformation of the Frequency map (K-space) to anatomical and statistical maps. The problem is to choose the best out of at least five different software packages to do so. While the raw format will be dependent on the manufacturers standards (see Section for Philips, General Electrics, Siemens and Bruker ), the approach to perform statistical analysis is up to the user. There are the following options: |
| The Harvard Version | FAST | Freesurfer |
| The Wellcome Version | SPM | SPM2 |
| Other | Brain Voyager | Montreal Tools |
MRI related imaging - overview:
| Location | What is it good for? | Format | Viewer / Author | Support |
| Boston | Introduction Analysis | .bshort .bfloat, separate (.hdr) | xds | Harvard Manual |
| Boston | Inflate and Flatten | .nmc, header included | Freesurfer | CorTechs Freesurfer |
| Montreal | Introduction Analysis | .nmc, header included | Display.mesa | MINC
Manual MINC Tools |
| Maastricht | Introduction Analysis | Brain Voyager | Brain Voyager | |
| Magdeburg | Everything related to our center | .bshort .bfloat, separate (.hdr) .img, separate (.hdr .mat) |
xds SPM |
MRT_MD STIMULUS_ARCHIVES SPM_ANA MRT_MD_DIRsystem MRT_slice-orientation Presentation_MD |
| Mayo Clinic | Introduction Analysis | Analyse | Analyse | |
| Nottingham | Viewer and Converter Data Format | Micro | Micro | |
| Los Angeles | Motion correction | AIR | ||
| SourceForge | Data Format Converter | (X)MedCom | ||
| NIH | Analyse, Processing Data | AFNI | AFNI | |
| FSL Oxford | Brain Image Analysis Tools | several | FSL | |
| MAD | Multivariant Methods for MRI | MAD | ||
| MRC CBU Imaging | Methods and Introduction | Matthew Brett | MRC | |
| Denmark | Neuroinformatics | FA Nielson | Neuroinf | |
| David Clunie | DICOM Format Page | David Clunie | DICOM | |
| Brede neuroinformatics toolbox | analyse/visualize results | .img, separate (.hdr .mat) | Nielson/Lipirol | LYNGBY |
SPM general stuff:
| WFU Atllas for SPM99/SPM2 |
online Atlas for activations |
WFU |
SPM99 stuff:
| London | SPM99 | SPM Central |
| SPM Tutorial .pdf | ||
| SPM extensions | ||
| Stanford | SPM99 extensions | SPM extensions |
| Cambridge UK |
SPM99 introduction |
SPM
intro |
SPM2 stuff:
| London | SPM2 | SPM2 Central |
| Belgian Université Catholique de Louvain | Batch automation script | SPM2 Batch Belgium |
| Andrew Janke | Converter Software | Converter |
| Cambridge UK | Batch automation script | SPM2 Batch UK |
| CBMG-Tools | add-on tools |
CBMGtools |
| John Ashburner |
specific SPM2 snippets |
SPM2
john |
NMR Homepages:
| GE | Bruker | Siemens | Fonar |
| Varian | Philips (Marconi) | Toshiba |
Web and MRI:
| What | by | Location |
| MRI everything | HealthSystems | goto WWW |
| MRI and Computer Science | D. Heeger | goto WWW |
| CBU Imaging | Cambridge | goto WWW |
| The whole brain atlas | Keith A. Johnson & J. Alex Becker | goto WWW |
| The Talairach Daemon | ICBM | goto WWW |
| The Basics of MRI | Joseph P. Hornak | goto WWW |
| An Introduction to MR | Graham Wright | goto WWW |
| Human Brain
Function (online Book) |
Ashburner/Friston/Penny |
goto WWW |
| Brain
Module |
Wayne
State University |
goto WWW |
| The
Navagable Atlas of the Human Brain |
Sulheimer
et al |
goto WWW |
| An Introduction to MRI | Ray Ballinger |
goto WWW |
 |
Using MEG for the investigation of cognitive processes combines the advantages of high temporal resolution and spatial resolution. At our facility the Software package CURRY is used for statistical analysis and the transformation of structural and functional MRI imaging. We have developed several tools for statistical mapping of fMRI and the combination of fMRI and MEG on the CURRY platform. |
Software Overview
| Curry | Neuro Scan Labs | Curry |
| BTI | 4 D Neuroimaging | BTI |
Helpful links
| Curry scripts | by M. Scholz | CUSS |
| Introduction
into MEG/EEG Physiology |
by
CBU |
CBU |
| Stimulus presentation setting | by J. Heinrich | MEGpres |
 |
ERP research is a wide, wild field due to the longest history of all imaging methods. This relates to the published body of work, the recording and analysis of the results as well as the presentation of the different groups with their own style. To get the flavor, just look for the polarization setting in two random papers. At our facility we still cherish a software package of the old, San Diego days: vvsp for presentation, plekp for recording and - not to mention any detail - a lot of stuff for artifact rejection. |
Helpful links
| MD_Neuro2 Manual for ERPSS | by M. Scholz | ERPSS |
| Introduction (basic) into EEG and MEG | by W.T. Roth | EEG_MEG |
| EEGLAB | by SCCN | EEGLAB |
General
UNIX
Guides
to approach a new world.
| What | by | Location |
| UNIX Basics | Andrew Lawrence | goto WWW |
| UNIX Complete Interactive | University of Edinburgh | goto WWW |
| UNIX and more Interactive | UnixTools.com | goto WWW |
| VI editor intro | Ben Yoshino | goto WWW |
| SSH shell |
load SSH |
Matlab
THE
Platform for development.
| What | by | Location |
| Matlab Home | The MathWorks | goto WWW |
| Matlab Complete Interactive | University of Indiana | goto WWW |
| Matlab Basics | University of Utah | goto WWW |
| Matlab Modules | University of New Hampshire | goto WWW |
| Matlab Control Tutorials | University of Michigan | goto WWW |
| Matlab Tutorial for fMRI | NMR Center, Harvard, Boston | goto WWW |
Organisations
Always
pay to be the in-crowd.
| What | Location |
| Organisation for Human Brain Mapping | goto WWW |
| Neurology | goto WWW |
| Deutsche Gesellschaft für Klinische Neurophysiologie | goto WWW |
| Deutsche Gesellschaft für Neurologie | goto WWW |
| Neuroscience | goto WWW |
Software for Stimulus
Presentation
How
to get stuff to the subject.
| What | by | Location |
| Presentation | Neurobehavioral Systems | goto WWW |
| Cogent 2000 | FIL London | goto WWW |
| VVSP | to be determined | goto WWW |
| VAPP | Kent Kiehl and Tony Gray | goto WWW |
| DMDX | Matt Davis | goto WWW |
| DMDX updates | J. Forster | goto WWW |
| LabView | Natinonal Instruments | goto WWW |
Personal
| Name | Dr. Michael Rotte |
| Date of Birth | 30th May 1964 |
| Citizenship | Germany |
| Marital Status | married |
Education
| School | 1970-1974 | (Primary School) Grundschule Altwarmbüchen, Germany |
| 1974-1984 | (Secondary School) Gymnasium Isernhagen, Germany | |
| Military Services | 1984-1985 | Munster, Germany |
| Medical School | 1985-1991 | Medical High School Hannover, Germany |
| Education in other countries | 1989 | Derriford Hospital, Plymouth, UK |
| 1989 | Hiroshima University, Hiroshima, Japan | |
| Final Year | 1991-1992 | Internal Medicine: Albert Einstein University of Medicine, New York, USA |
| Surgery: Medical High School, Hannover, Germany | ||
| Radiology: Medical High School, Hannover, Germany | ||
Academic Positions
| 1992-1994 | Residency in Neurology | Clinic for Neurology, Medical University Hannover, Germany |
| 1994-1995 | Residency in Neurology | Clinic for Neurophysiology, O.-v.-Guericke University, Magdeburg |
| 1995-1996 | Residency in Psychiatry | Clinic for Psychiatry, O.-v.-Guericke University, Magdeburg |
| 1996-1998 | Postdoctoral Fellow | D.L. Schacter, Harvard University,
Cambridge,
USA, and B.R. Rosen, NMR-Center, MGH, Boston, USA |
| 1998-1999 | Fellowship in Neurology | Clinic for Neurology II, O.-v.-Guericke University, Magdeburg |
| 2000- | Associate Professor | Clinic for Neurology II, O.-v.-Guericke University, Magdeburg |
| Principal Investigator | CAI (Center for Advanced Imaging), Zenit, Magdeburg | |
| 2006- |
Director Neuroimaging |
Novartis, Basel |
Literature
| peer reviewed publications | other contributions |
| internet search and found material michael rotte |
| created by M. Rotte 12/2000, last changes 11/11/2002, all rights reserved | comments welcome rotte@neuro2 |